External Email - Use Caution
Hello Bruce,
Yes, i do want segmentation. But i am more interested in getting just white matter and grey matter in segmented brain. As the segmentation results also have left ventricles and right ventricles and other parts as well. I am more interested in just getting white matter + grey matter of brain. How can i get this ?
Also, I looked at aparc+aseg.mgz, when i try to see 3D of it, using free-view. I see half brain in 3D. How can i see the 3D of segmented brain.
Thanks, Ritesh Mahajan
----- Original Message ----- From: "Bruce Fischl" fischl@nmr.mgh.harvard.edu To: "freesurfer" freesurfer@nmr.mgh.harvard.edu Sent: Wednesday, May 30, 2018 7:26:37 PM Subject: Re: [Freesurfer] white matter and grey matter
Hi Ritesh
can you clarify what you mean? Do you want a segmentation? You can get that in the aparc+aseg.mgz at the end of the recon-all processing.
cheers Bruce On Wed, 30 May 2018, Ritesh Mahajan wrote:
External Email - Use CautionHello Team,
- How can i just get the white matter and grey matter together?
- At what stage of free-surfer i can get this?
I tried looking at the brainmask.mgz at the end of recon-all -autorecon1 stage. But, it looks like it has CSF and other parts of brain as well.
Can you please help me out with this?
Thanks, Ritesh Mahajan
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