Re: [Freesurfer] tkmedit segmentation color offset

Hi Natalie

sorry, tkmedit won't do what you want. It's old and we are not developing it anymore. You can apply the transform using mri_vol2vol, just make sure to use nearest nbr interp for the aseg.

cheers Bruce On Tue, 5 Mar 2013, Natalie Han wrote:

Hi, all,  I have a tkmedit display issue when I try to add transformation to the main volume, but the segmentation volume won't conform to Talairach domain accordingly. Here is the commandline

tkmedit subject norm.mgz  -main-transform talairach.xfm -seg aseg.mgz

really appreciate any feedback on how to add transformation on this segmentation results.

Thanks. Natalie