Try specifying only the in orientation or the out orientation as LAS (don't use PSR). I think one of them will work (probably in_orientation). doug
On 07/02/2013 11:56 AM, Ray, Siddharth wrote:
mri_convert --in_orientation PSR --out_orientation LAS input.img output.img
~siddharth
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve Sent: Tuesday, July 02, 2013 10:46 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Loosing data when using mri_convert
what is your command line?
On 07/02/2013 11:41 AM, Ray, Siddharth wrote:
Hi all,
So I am trying to reorient my sagittal scans (with messed up labels) to axial using mri_convert (to get right label), I am able to do so but I am loosing some data (some slices).
When I checked voxel-to-ras transform for the original and reorient image, they were different.
How can I fix this?
Thanks in advance.
~Siddharth
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