Hi, Bruce, I realized that I should use mris_sphere, mris_register and mrisp_paint tools, but I have no idea on how to set the parameters of these commands. May you or somebody else give me some help? Thanks. Aize
Date: Fri, 15 Apr 2011 10:47:08 -0400 From: fischl@nmr.mgh.harvard.edu To: caoaize@hotmail.com CC: nicks@nmr.mgh.harvard.edu; freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Cortical thickness in the template space
Hi Aize,
yes, that should do it.
cheers, Bruce On Fri, 15 Apr 2011, caoaize wrote:
Hello there, We have a bunch of files that had freesurfer run already, simply using the command "recon-all -s subjid -all", in order to get the cortical thickness in fs average space, should we have to re-run all of them again using "recon-all -s subjid -qcache -measure thickness", or we may apply some transformation reported already to transform the thickness from subject space to fs average space ? Does anyone have any suggestion on how to do that? Thanks. Aize
Subject: Re: Cortical thickness in the template space From: nicks@nmr.mgh.harvard.edu To: caoaize@hotmail.com CC: freesurfer@nmr.mgh.harvard.edu Date: Tue, 8 Mar 2011 16:50:41 -0500
Aize,
run:
recon-all -s subjid -qcache -measure thickness
and this will create files in the /surf dir which sample the thickness data at different smoothing levels onto the fsaverage subject space.
n.
On Wed, 2011-03-09 at 05:46 +0800, caoaize wrote:
Hello,
We try to look at the two group difference of cortical thickness, but I need the lh(or rh).thickness file, which reported in template space (FS average space), but after run recon-all -all, what I have is only lh.thickness, or rh.thickness, which is in subject's space. Would someone point me where or how I can get them? Thanks.
Aize
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