Hi,
this usually happens when the RAS center is incorrect in your data. It is not really a bug, but we prepared a version that does not use the ras coordinates but the center of mass instead for initial alignment. What operating system are you running?
Cheers Martin
On Nov 20, 2009, at 8:24, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
yup, looks like a bug. Can you arrange to send the data to Martin?
thanks Bruce On Fri, 20 Nov 2009, Hui Zheng wrote:
Hi all,
We have a problem in longitudinal processing. The mri_robust_template somehow chopped off a part of the brain (attached image). Any idea how to correct this? With this "partial" template, the longitudinal processing of phase 1 and 2 data were also wrong. This is the second subject I was checking. I hope it is not a common problem. I can provide the subject's data if necessary.
Thanks, Zheng Hui