hmmm, I don't see anything glairing in the log. I guess upload the subject and we'll take a look Bruce
On Wed, 20 Feb 2019, mara alves wrote:
External Email - Use Caution
Here is the recon-all.log for one for old subjects.Thanks, Mara
mara alves mara.f.alves@gmail.com escreveu no dia quarta, 20/02/2019 à(s) 09:57: Hi, Thanks for the quick reply. What do you mean about uploading the entire subject? All the output files of the recon -all?
Best, Mara
Bruce Fischl fischl@nmr.mgh.harvard.edu escreveu no dia terça, 19/02/2019 à(s) 23:10: wow, that looks pretty bad. Can you send us the recon-all.log (or upload the entire subject and we will investigate)? On Tue, 19 Feb 2019, mara alves wrote:
> > External Email - Use Caution > > Hi there, > > I ran the recon -all command in two samples, one of young participants and another of older > subjects. > > The segmentation worked well for young participants, however it seems that for older participants > the white.pial segmentation it is being done incorrectly. I believe it is segmenting the gray matter > instead (please see the pics attached). > > Best, > Mara > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer