'mris_pmake' is still very experimental. It's not run as part of the standard recon-all stream, and is more of a post-processing surface tool. It has a somewhat complicated set of dependencies at this stage (among them, a file called 'options.txt' that controls its behavior).
What are you looking to do with it?
Best -=R
On 10/25/11 10:51 , Steph Bickel wrote:
Hi,
when trying to use mris_pmake I get error messages: when I run:mris_pmake I get: sh: cannot create lock: Permission denied
mris_pmake I'm sorry, but an error condition has occurred. While I was checking on the options file, I couldn't access the options file. Does it exist?
Exiting to system with code 40
When I run: sudo ./bin/mris_pmake I get: mris_pmake I'm sorry, but an error condition has occurred. While I was processing environment, it seems that the SUBJECTS_DIR env variable is not set.
Exiting to system with code 10
I did specify SUBJECTS_DIR in SetUpFreesurfer.sh that I source in the bashrc file and the variable is set for the other freesurfer functions.
I am using freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 on ubuntu 11.04.
Any help is much appreciated.
thanks,
Stephan
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