9 Aug
2024
9 Aug
'24
3:49 p.m.
External Email - Use Caution
I have been writing scripts with the mideface program. Her the exact line of code i am using.
mideface --i $Anatfolder/${mprs[0]}_T1w.nii.gz --odir $defacefolder --o $defacefolder/bids/${mprs[0]}_desc-defaced_T1w.nii.gz --pics --facemask facemask.mgz
I am using FreeSurfer 7.4 on Ubuntu 20.04 and 22.04
I noticed that it will not honor the --facemask flag. I found the exact issue is on line 310 of where it set the facemask variable. I am fine with the standard name, I was just following instructions on one of your tutorial. I just want to point this out.