hi zeke,
i’m following your instructions for getting freesurfer 5.3.0 installed on debian, though i’m at 7.x as that is what came from ThinkMate on some recently delivered supermicro machines for our lab.
i’m not successful, and have paused at an error.
1) libtool-bin does not exist for debian/wheezy
but i decided to just plow ahead
2) in doing the “git annex get .”
i get the following error (it worked for some time as grabbing things)
thoughts?
#———————————————error below this line————————————————————
2016-03-29 18:12:07 (6.58 MB/s) - `/home/Software/git/freesurfer/.git/annex/tmp/SHA256-s9167701--75de544880a3d0621958725eb3e89d31c78d13fe60276820123ad96541535099' saved [9167701/9167701]
ok get vtkutils/vtkKWRGBATransferFunctionEditorTester-scalars.mgh (from origin...) --2016-03-29 18:12:07-- http://freesurfer.net/anonftp/pub/dist/freesurfer/repo/freesurfer.git/annex/... 600222256a7244ccd595cbe67b9ea949/SHA256-s655672--85f9b50e8fb8a72a8783152c7ad098c0600222256a7244ccd595cbe67b9ea949 Resolving freesurfer.net(freesurfer.net)... 132.183.202.158 Connecting to freesurfer.net(freesurfer.net)|132.183.202.158|:80... connected. HTTP request sent, awaiting response... 200 OK Length: 655672 (640K) [text/plain] Saving to: `/home/Software/git/freesurfer/.git/annex/tmp/SHA256-s655672--85f9b50e8fb8a72a8783152c7ad098c0600222256a7244ccd595cbe67b9ea949'
100%[===========================================================================================>] 655,672 1.36M/s in 0.5s
2016-03-29 18:12:08 (1.36 MB/s) - `/home/Software/git/freesurfer/.git/annex/tmp/SHA256-s655672--85f9b50e8fb8a72a8783152c7ad098c0600222256a7244ccd595cbe67b9ea949' saved [655672/655672]
ok (Recording state in git...) git-annex: get: 5 failed
---------------------------------------- Robert C. Welsh, Ph.D. Associate Professor Department of Radiology Department of Psychiatry University of Michigan rcwelsh@umich.edu
Associate Director, VA-fMRI Research, VA Ann Arbor
------------------------------ typos due to iPhone 4S