7 Oct
2021
7 Oct
'21
2:20 p.m.
External Email - Use Caution
Hello.
I am trying to run recon-all with -localGI option. I am running freesurfer on HPC clusters where there is no Matlab license. When I add this option, freesurfer fails with this error message.
mris_compute_lgi --i rh.pial ERROR: Matlab is required to run mris_compute_lgi!
I am running freesurfer where it has access to MCR runtime to run compiled Matlab script. Is it possible to compile whatever the Matlab script that this module is using so that it can run without the full Matlab installation/license on our HPC systems?
Thank you! Soichi