Hi Tara the second "V1" is for looking up the name of the label in FreeSurferColorLUT.txt. If you were converting to an annotation for example we would embed the proper colors into it.
cheers Bruce
On Thu, 7 Aug 2014, Tara Miskovich wrote:
Hi Doug thank you for the response. I just wasn't sure what was required here. Specifically why we need to call on the white matter surface. And what the second V1 would be for. Thank you, Tara [cleardot.gif]
On Thu, Aug 7, 2014 at 11:05 AM, Tara Miskovich miskovi2@uwm.edu wrote: Hi all,
I could really use some help with this
I am trying to convert a group cluster to GIFTI (.gii) format. I just need some help running mris_convert.
The example for a label to GIFTI is
mris_convert --label lh.V1.label V1 lh.white lh.V1.label.gii
I'm trying to figure out what is required here. I understand I put in the label after label and the output at the end, but in this example I am not sure what the V1 and lh.white are for.
Thanks, Tara