you can also use wm-anat-snr. Run it with --help to get more info.
Louis Nicholas Vinke wrote:
Hi John, We do have a set of QA scripts which were created to check the version of FS used, the order of the output files, the order of all the steps in FS, take several snapshots, and then create a summary log file and an html file to view the snapshots. The scripts have been neglected for some time, but recently I've been updating them and weeding out a couple bugs left over.
Here is the wiki page for the scripts: http://surfer.nmr.mgh.harvard.edu/fswiki/QATools
I'll send out an announcement when an updated and debugged version of the scripts has been posted. Should be relatively soon. -Louis
On Fri, 17 Jun 2011, West, John D. wrote:
Hello.
We are in the process of trying to develop a QC pipeline for our Freesurfer processed images. I was wondering if anyone has developed any type of automated QC they would be willing to share with us or have any suggestions on how to proceed.
Any help would be most appreciated.
Thanks. -John West Systems Admin/Imaging Analyst IU Center for Neuroimaging
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