Hello freesurfers,
I am trying to unpack a couple of recent subjects in Stable 4. I ran all steps through recon-all without error. However, when I try to run the next step, preproc-sess, it keeps failing.
This is the command I enter:
preproc-sess -s FB0011060AA -fwhm 5
It works for about 30 seconds, and then I get the following in return
niiRead(): bad number of dimensions (0) in 013/tmp.mc-afni2.15211/outvol.nii.gz reading info from 013/f.nii... $Id: mri_convert.c,v 1.146.2.5 2009/04/08 18:40:23 nicks Exp $ reading from 013/tmp.mc-afni2.15211/outvol.nii.gz... ERROR: converting output Invalid null command. ERROR: mc-sess failed
the error for the other subject was slightly different:
niiRead(): error reading from 013/tmp.mc-afni2.15452/outvol.nii.gz reading info from 012/f.nii... $Id: mri_convert.c,v 1.146.2.5 2009/04/08 18:40:23 nicks Exp $ reading from 013/tmp.mc-afni2.15452/outvol.nii.gz... ERROR: Read 14, expected 64 ERROR: converting output Invalid null command. ERROR: mc-sess failed
Any idea what might be going on? I've done these same steps many times for processing data and have not before received this error.
Thanks!
Adam Nitenson, B.S. Brain Genomics Lab Massachusetts General Hospital