Re: [Freesurfer] [freesurfer] Extracting values of cortical thickness in each vertex.

Hi Bruce, I am very new for FS, so did not understand you comments completely. sorry..

For cortical thickness from each vertex in one subject, which scripts should follow "mris_convert"? And another question is how to recognize the location of each vertex in brain finally.

thank you so much

Kyung

2017-11-13 10:06 GMT+09:00 Bruce Fischl fischl@nmr.mgh.harvard.edu:

p.s. if you want the vertices to correspond, first run recon-all -qcache for each subject. That will generate a set of thickness maps in fsaverage space at predefined smoothing levels (so that the vertex numbers correspond across subjects)

On Mon, 13 Nov 2017, 박경일 wrote:

Hi Bruce,What I want is the values of cortical thickness in each vertex in

...

each subject. Is that

possible? Thanks so much.

Kyung

2017-11-13 0:43 GMT+09:00 Bruce Fischl fischl@nmr.mgh.harvard.edu: Hi Kyung

  you can load them into matlab or convert them to ascii if you want
  Bruce
  On Sun, 12 Nov 2017, 박경일 wrote:

        Dear FS experts,
        I could get QDEC image comparing two groups.
        However, is there a way to get numerical values of cortical

thickness in each vertex?

        Thank you

        Best,
        Kyung

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