Hi Satra - We've been talking about a 5.3.1, yes. On my end, it would include the tracula updates that are currently available and possibly some more (I've been working on some improvements to longitudinal tracula).
Not sure about libnetcdf but this is a good time to add things to the wish list :)
a.y
On Fri, 4 Apr 2014, Satrajit Ghosh wrote:
hi folks, we are setting up freesurfer on a new cluster and trying to be as modular as possible in terms of dependencies. at present we are only installing 5.3.0 + tracula updates.
will libnetcdf (required by tracula) be included in freesurfer? or is it considered a dependency?
and talking of which, is there a patch (a 5.3.1) in the horizon which will include the tracula updates and perhaps netcdf in the freesurfer download.
cheers,
satra
On Wed, Feb 5, 2014 at 11:07 PM, Satrajit Ghosh satra@mit.edu wrote: update: the lack of libnetcdf eventually makes it fail. i found a libnetcdf.so.7 on the cluster and soft linked it to libnetcdf.so.6 and added the path to LD_LIBRARY_PATH.
that let trac-all -prep run to completion.
cheers,
satra
On Wed, Feb 5, 2014 at 9:02 PM, Satrajit Ghosh satra@mit.edu wrote: hi a.y., when running trac-preproc i'm getting this error (for dmri_motion and dmri_group), but it continues running:
/software/freesurfer/bin/dmri_motion: error while loading shared libraries: libnetcdf.so.6: cannot open shared object file: No such file or directory
what will this fail to do?
also is libnetcdf now a dependency for freesurfer? the reason i ask is that i'm running this on a remote cluster for which i don't have admin privileges.
cheers,
satra