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HI Douglas, sorry for my late reply. I can't log in to https://gate.nmr.mgh.harvard.edu/filedrop2
----- Mail original ----- De: "Douglas N. Greve" dgreve@mgh.harvard.edu À: "freesurfer" freesurfer@nmr.mgh.harvard.edu Envoyé: Mercredi 4 Avril 2018 17:23:25 Objet: Re: [Freesurfer] Freesurfer6.0 failure
Hi Naka, sorry, this dropped through the cracks. I had solved a similar problem for someone else and thought they were the same problem! Can you upload your subject's dir to our file drop? https://gate.nmr.mgh.harvard.edu/filedrop2
On 04/04/2018 04:14 AM, Naka Beguedou wrote:
Hi Bruce,
did you solve out my problem?
Naka
----- Mail original ----- De: "Bruce Fischl" fischl@nmr.mgh.harvard.edu À: "freesurfer" freesurfer@nmr.mgh.harvard.edu Envoyé: Mardi 13 Mars 2018 16:05:14 Objet: Re: [Freesurfer] Freesurfer6.0 failure
Hi Naka
we have tracked down this problem and should have a patch soon
cheers Bruce
On Tue, 13 Mar 2018, Naka Beguedou wrote:
Hello, I allow myself to send you this mail in order to have some informations. we have a problem concerning the segmentation of FREESURFER6.0 Indeed for T1image of one subject, the surface segmentation(figure1) is accurate but there is failure on the cortical segmentation(figure2) of the right hemisphere for the free surfer 6.0. For that subject, we relaunched the free surfer6.0 , but still the same problem. Here is the command we used to relaunch the free surfer6.0 for that subject: recon-all -all -FLAIR FLAIR/FLAIR_585.nii.gz -i T1/T1_585.nii.gz -brainstem-structures -3T -contrasurfreg -qcache -subjid SHARE0585_2 -sd /scratch/alaurent006/freesurfer_end -FLAIRpial
What can we do about it?
Thanks
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