Hi Doug et al,
After solving one issue with QDEC we have run into another. I previously posted an error related to QDEC being unable to find subjects in the subjects directory. That problem was solved by updating the /bin/sh location for ubuntu (will post the solution that worked for us to the archive).
The data table now loads fine, it finds all the discrete and continuous factors. However, I am still getting the following error about the GLM Design creating zero factors. See below.
I can't find any info about this error in the archive.
Any thoughts are much appreciated!
Data table attached.
Thanks, Kate
Loading data table /neuro/labs/sheridanlab/projects/SAS/FreeSurfer/FS_5.3/qdec/qdec.table.maltreatment.dat... Number of columns: 8 fsid column: 1 Number of factors: 7 Number of subjects: 42
Data table /neuro/labs/sheridanlab/projects/SAS/FreeSurfer/FS_5.3/qdec/qdec.table.maltreatment.dat loaded. Verifying subject data..........................................Subject verification complete. Input table: /neuro/labs/sheridanlab/projects/SAS/FreeSurfer/FS_5.3/qdec/qdec.table.maltreatment.dat Subj#, SubjID, Data... 1 1009 0.000000 0.763636 0.000000 0.000000 1.500000 -3.547619 348130.000000 2 1014 0.000000 0.098336 0.000000 0.000000 -11.500000 -10.547619 149370.000000 3 1032 0.000000 2.507636 0.000000 0.000000 2.500000 0.452381 -960.000000 4 1034 0.000000 0.101136 0.000000 0.000000 -15.500000 -11.547619 190570.000000 5 1041 1.000000 -2.516264 0.000000 1.000000 17.500000 12.452381 -26620.000000 6 1043 1.000000 -1.453964 0.000000 0.000000 7.500000 12.452381 205250.000000 7 1047 0.000000 -0.933764 0.000000 0.000000 -10.500000 -0.547619 -73620.000000 8 1058 1.000000 1.171636 1.000000 0.000000 14.500000 7.452381 -42730.000000 9 1077 0.000000 0.281836 1.000000 0.000000 -16.500000 -12.547619 -40610.000000 10 1094 1.000000 0.142136 1.000000 0.000000 3.500000 -1.547619 -158930.000000 11 1096 0.000000 -1.711364 1.000000 0.000000 -6.500000 -6.547619 31690.000000 12 1097 0.000000 -0.323264 1.000000 0.000000 6.500000 0.452381 -218300.000000 13 1099 0.000000 2.488536 0.000000 0.000000 -14.500000 -8.547619 279160.000000 14 1100 1.000000 1.404336 1.000000 0.000000 9.500000 -0.547619 -77570.000000 15 1114 1.000000 -0.312264 1.000000 0.000000 -10.500000 -12.547619 141560.000000 16 1119 1.000000 -1.374564 0.000000 0.000000 -7.500000 18.452381 110660.000000 17 1123 1.000000 0.988136 0.000000 0.000000 33.500000 16.452381 -27400.000000 18 1125 0.000000 0.287236 1.000000 0.000000 -7.500000 -8.547619 -67320.000000 19 1126 0.000000 -1.820864 0.000000 0.000000 -14.500000 -12.547619 348770.000000 20 1128 0.000000 -1.338964 1.000000 0.000000 -0.500000 -6.547619 -101590.000000 21 1134 0.000000 -2.086464 1.000000 0.000000 -4.500000 -5.547619 -42360.000000 22 1137 1.000000 1.324936 0.000000 0.000000 12.500000 23.452381 -108080.000000 23 1139 1.000000 0.875936 1.000000 0.000000 -4.500000 0.452381 -199980.000000 24 1142 1.000000 -0.851664 1.000000 0.000000 10.500000 2.452381 -386850.000000 25 1143 1.000000 -2.820164 1.000000 0.000000 11.500000 -13.547619 -109600.000000 26 1153 1.000000 -2.458764 1.000000 0.000000 13.500000 10.452381 369170.000000 27 1154 1.000000 -1.234964 1.000000 0.000000 -8.500000 -2.547619 -261410.000000 28 1157 0.000000 1.034736 1.000000 1.000000 -10.500000 -6.547619 -67330.000000 29 1158 1.000000 1.163436 1.000000 0.000000 11.500000 11.452381 -71900.000000 30 1163 1.000000 1.371436 0.000000 0.000000 15.500000 7.452381 239550.000000 31 1165 1.000000 -0.517664 0.000000 1.000000 -11.500000 -2.547619 16810.000000 32 1166 1.000000 -2.302764 0.000000 1.000000 -7.500000 1.452381 220140.000000 33 1167 1.000000 0.292736 1.000000 1.000000 12.500000 11.452381 -117810.000000 34 1171 0.000000 1.385136 1.000000 0.000000 6.500000 -7.547619 59040.000000 35 1173 0.000000 1.075736 1.000000 0.000000 -7.500000 2.452381 -86380.000000 36 1175 0.000000 1.765736 1.000000 0.000000 -1.500000 -6.547619 -31300.000000 37 1176 0.000000 1.732836 0.000000 0.000000 -11.500000 -3.547619 108560.000000 38 1177 1.000000 0.717136 1.000000 0.000000 -5.500000 10.452381 -53070.000000 39 1178 1.000000 -0.241164 1.000000 0.000000 33.500000 15.452381 -110020.000000 40 1179 0.000000 0.944336 1.000000 0.000000 -7.500000 0.452381 15300.000000 41 1180 0.000000 0.760936 1.000000 0.000000 -18.500000 -13.547619 -97800.000000 42 1181 0.000000 -0.380764 1.000000 0.000000 -9.500000 -7.547619 -60610.000000 1 maltreatment continuous 0 2 age_demean continuous 0 3 sex continuous 0 4 hs_less continuous 0 5 internal_demean continuous 0 6 external_demean continuous 0 7 ICV_demean continuous 0 Continuous Factors: Mean: StdDev: ------------------- ----- ------- maltreatment 0.500 0.506 age_demean -0.000 1.410 sex 0.619 0.492 hs_less 0.119 0.328 internal_demean 0.000 12.769 external_demean 0.000 9.759 ICV_demean 4609.048 168177.248
Number of subjects: 42 Number of factors: 7 (0 discrete, 7 continuous) Number of classes: 1 Number of regressors: 8 ============================================================ Data table loading completed successfully. SUBJECTS_DIR is '/net/rc-fs-nfs/ifs/data/Shares/DMC-Sheridan2/projects/SAS/FreeSurfer/FS_5.3' ERROR: QdecGlmDesign::Create: zero factors!