I'm not sure what you are doing as I have never used fieldtrip. I would suggest contacting the fieldtrip developers. If you can isolate the problem to something that FS is doing (eg, an error in recon-all), then please repost with the recon-all.log file.
On 03/11/2018 04:19 PM, Maria Carla Piastra wrote:
Dear Freesurfers,
I am running the pipeline described here:
http://www.fieldtriptoolbox.org/tutorial/sourcemodel
and it fails:
mris_convert --volume Subject01_fieldtrip lh /DATA2/results_freesurfer/Subject01/surf/lh.volume MRISread(/DATA2/results_freesurfer/Subject01/surf/lh.white): could not open file No such file or directory
when running: /recon-all -finalsurfs -subjid Subject01/ lh.volume does not exist so far. How can I create it?
I tried to follow the suggestion here: https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg06716.html, without success.
Many thanks,
Maria Carla
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer