Re: [Freesurfer] .label files for subcortical structures

You can use mri_cor2label. The output coordinates will be "tkregister-style" RAS, which is probably not useful to you. Check out

https://surfer.nmr.mgh.harvard.edu/fswiki/CoordinateSystems

For how to convert to other coordinate systems doug

On 08/05/2014 11:30 AM, Krieger, Donald N. wrote:

Hi Everyone,

What tool(s) are used to extract the vectors for subcortical labels?

What I need are the RAS coordinates for the cerebellum, basal ganglia, etc.

Is there something for extracting them from aseg.mgz ?

Or is there something for generating a .annot file so that mri_annotation2label may be used?

Or is there some other way?

Thanks.

Don

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