24 Oct
2008
24 Oct
'08
11:54 a.m.
You can use mri_binarize with the --match option to spec the index, eg:
mri_binarize --i aseg.mgz --match 17 --o hippo.lh.nii
doug
Martin Ystad wrote:
Hi, I'd like to create binary masks in the nifti-format from each of the subcortical segmentations in freesurfer, separately (one for hippocampus, one for thalamus, and so forth..). Is there any way to do this automatically from the command line?
Thanks, Martin Ystad Ph.D. candidate, University of Bergen
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
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Fax: 617-726-7422
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