[Freesurfer] Re: Transformation of segmenation

Hi Shahab,

I think:

mri_convert -rl rawavg.mgz -rt nearest aseg.mgz aseg_raw.mgz

should do it (-rl says to reslice like the rawavg.mgz file, and -rt says to used nearest nbr resampling)

Bruce

On Sat, 25 Mar 2006, Shahabuddin Ansari wrote:

Hello Bruce,

Let me rephrase my question. When I pass a brain MRI to freesurfer, it transforms the image spatially before it does the segmentation. Now the segmented objects have different orientation from the original MRI. My question is how can I transform the segmentation back to original MRI?

Thanks Shahab

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