Hi Susan, mri_glmfit-sim did not exist in 4.X. If you want to use 4.X, then you'll need to run mri_glmfit with the simulation options. If I were you, I would install a version of 5.X. You can run the glm and MC simulations using 5.X on data created by 4.X, just don't rerun recon-all using 5.X doug
On 01/07/2013 04:29 PM, Susan Alice McLaughlin wrote:
Hi,
I am trying to run a Monte Carlo simulation on functional data constrained to a label using Freesurfer 4.0.1. I did not use Qdec for data analysis.
Looking at a previous post - https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2010-November/016290.... - I see that I should: 1) constrain when running mri_glmfit, then 2) use mri_glmfit-sim (as opposed to running mri_glmfit with the simulation options).
I have done step 1, however when I try to mri_glmfit-sim, I receive a "command not found" message. Is mri_glmfit-sim not available in 4.0.1? Can I copy a workable version of mri_glmfit-sim into 4.0.1?
Thanks,
Susan McLaughlin Doctoral Candidate SPACE Lab (Stimulus-Parametric Imaging of Auditory Cortex) Dept. of Speech and Hearing Sciences University of Washington
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