Hi Scott - Could you try running bedpostx on the dmri/ directory directly and see what if any error you get?
a.y
On Fri, 16 Dec 2011, Scott Hayes wrote:
Hi, The following files & directories are listed directly under dmri.bedpostX:
bvals commands.txt logs nodif_brain_mask.nii.gz bvecs diff_slices monitor xfms
--Scott
Anastasia Yendiki Fri, 16 Dec 2011 09:43:47 -0800
Hi Scott - Are there any files created directly under dmri.bedpostX?
a.y
On Fri, 16 Dec 2011, Scott Hayes wrote:
Hi, After I run step 2 of tracula (>trac-all -c config_DTI_B.txt -bedp), I am missing multiple bedpost output files (e.g., mergedph1samples.nii). Examining the output, it looks like data from only one slice was written (dmri.bedpostX/diff_slices/data_slice_0002). This issue has replicated across multiple subjects. I'm processing data locally on mac os 10.6.8 (16 GB RAM; two 3.2 quadcore processors, which should be able to handle bedpost), using FSL 4.1.9. I don't see any errors in the tracula log files (until I run -path), and no complaints in the terminal window (which writes: Queuing parallel processing stage 0 slices processed 1 slices processed 1 slices processed etc...
Any insight as to what might be causing the issue?
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