On the Mac, libgsl is included with Freesurfer in the directory /Applications/freesurfer/lib/gsl. Can you confirm that your LD_LIBRARY_PATH and DYLD_LIBRARY_PATH environment variables contain those paths? That is, examine the output of:
env | grep LD_LIBRARY
Also, make sure that these vars do not contain paths to the other versions of GSL. You can make sure of this by typing:
unsetenv LD_LIBRARY_PATH unsetenv DYLD_LIBRARY_PATH
before 'sourcing' the Freesurfer setup script.
On Sat, 2006-07-29 at 23:36 +0200, Charles-Henri Malbert wrote:
Dear collegue,
I was using Freesurfer 0.9 and I try to install freesurfer 3.
The install went smoothly and I update the cshrc file. The launch of Xterm went fine and the postinstall generate no errors (i.e. the GSL lib was found at GSL_DIR). When trying to test the install using tkmedit bert orig.mgz an error was generated saying that the GSL lib was not found at pubsw (dyld: Library not loaded: /usr/pubsw/packages/gsl/1.6/lib/libgsl.0.dylib). Indeed no pubsw folder was found at usr.
I was using fink and gsl was already installed in sw folder as part of Amide installation (a gnu front end of Xmedcon). May be the problem was arround there?
What's the problem
Thanks in advance
Charles-Henri Malbert DMV, Dr es Sci, HDR Directeur de Recherches UMR SENAH 35590 Saint-Gilles Tel: 02 23 48 50 71 Fax: 02 23 48 50 80
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