Jamie,
Does running with the -all flag run all the way to complete without error? We recommend running with -all and then inspect for defects afterwards instead of running the first run in stages.
Nick
Hi Freesurfer List-
My group just recently installed 5.3.0 and I kept running into the same error during -autorecon2 where mri_segstats could find ribbon.mgz.
I was slightly stumped on the issue, as the ReconAllTable says mri_segstats isn't run until autorecon3? I attached my bugr output and also my log file for one subject (I have about 10+ subjects that error in the same way).
It looks like -inflate2 finished fine (which was previously one of the last steps in autorecon2). Any thoughts? Any help is greatly appreciated!
Thanks much!
Best, jamie.
-- Jamie L. Hanson Waisman Laboratory for Brain Imaging & Behavior | Child Emotion Research Lab University of Wisconsin - Madison 1500 Highland Avenue Madison, WI 53705 Email: jamielarshanson@gmail.com Homepage: http://brainimaging.waisman.wisc.edu/~hanson/
FREESURFER_HOME: /apps/x86_64_sci6/freesurfer-latest
Build stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0
RedHat release: Scientific Linux release 6.2 (Carbon)
Kernel info: Linux 2.6.32-279.22.1.el6.x86_64 x86_64
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