19 Oct
2015
19 Oct
'15
8:38 a.m.
Hi John
I guess you could run recon-all through to the skull stripping, then copy your skull-stripped volume to brainmask.mgz in the subject's mri dir, then restart recon-all from there.
cheers Bruce
On Fri, 16 Oct 2015, John Anderson wrote:
Dear experts, I want to run recon-all on a stripped brains ( T1 images after applying bet tool). Do I need to add any flags to the command recon -all -all subjid <subj>
Bests, John