Hi,
Any insight on this problem I'm having with tkregister2? I haven't been able to resolve this yet. My original posting is below with the output from bugr.
Thanks! Mia ________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Borzello, Mia Sent: Monday, October 06, 2014 11:08 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] skewed CT viewed in tkregister2
Hi Freesurfers
I'm having trouble viewing a CT in tkregister2. Here is the output from bugr:
FREESURFER_HOME: /usr/local/freesurfer/stable5_3_0
Build stamp: freesurfer-Linux-centos6_x86_64-stable-v5.3.0-20130514
RedHat release: CentOS release 6.5 (Final)
Kernel info: Linux 2.6.32-431.20.3.el6.x86_64 x86_64
NMR Center info (/space/freesurfer exists):
machine: huygens
SUBJECTS_DIR: /autofs/space/huygens_001/users/mia/subjects
PWD: /autofs/space/huygens_001/users/mia/subjects/BI20v2_SurferOutput/mri
ssh huygens setenv SUBJECTS_DIR /autofs/space/huygens_001/users/mia/subjects cd /autofs/space/huygens_001/users/mia/subjects/BI20v2_SurferOutput/mri
1. BI20 2. tkregister2 --s BI20v2_SurferOutput --mov ct.mgz --reg spm.reg.dat --surf orig 3. the coronal/saggital/horizontal views were skewed 4.attached.
Thanks a lot, Mia