Hi Hannah,
What kind of environment are you running this in? These errors make it seem like you do not have a PATH variable set at all. Are you using bash? and what operating system?
best Andrew
On Jan 22, 2018, at 4:06 AM, Iglesias Gonzalez, Eugenio e.iglesias@ucl.ac.uk wrote:
Hi Hannah, This seems like a more general problem with your PATH, but I’m sure Andrew (CCed) has a better idea of what might be going on. Cheers, /Eugenio
-- Juan Eugenio Iglesias ERC Senior Research Fellow Translational Imaging Group University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/
On 20/01/2018, 00:23, "freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Hannah's USC Email" <freesurfer-bounces@nmr.mgh.harvard.edu on behalf of shanluo@usc.edu> wrote:
Hi Freesurfer experts,
I tried to do hippocampus subfield analysis but failed. I got this error message:
#@# Hippocampal Subfields processing (T1 only) left Fri Jan 19 15:27:36 PST 2018 dirname: Command not found. pwd: Command not found. pwd: Command not found. /run_segmentSubjectT1_autoEstimateAlveusML.sh: Command not found. #-------------------------------------------- #@# Hippocampal Subfields processing (T1 only) right Fri Jan 19 15:27:36 PST 2018 dirname: Command not found. pwd: Command not found. pwd: Command not found. /run_segmentSubjectT1_autoEstimateAlveusML.sh: Command not found.
Your help would be greatly appreciated. Thanks!
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