Hi Doug,
Is a standard 12 affine registration sufficient to get a subjects structural (in a different orientation) into the same space as norm.mgz, or will I need some non-linear registration? Basically, what kind of transforms are applied to go from orig to norm? - Joshua Lee Graduate Student Center for Mind and Brain & Department of Psychology University of California, Davis 530.747.3805
On Mon, Mar 25, 2013 at 10:52 AM, Joshua Lee jkilee@ucdavis.edu wrote:
Hi Doug. That was in fact what I decided to do.
Thanks!
Josh
J
On Mon, Mar 25, 2013 at 7:38 AM, Douglas N Greve < greve@nmr.mgh.harvard.edu> wrote:
Can you compute the registration between the manually traced anat space and the FS conformed space? Eg, with BBR. If you can do that, then you can run mri_label2vol to convert the mask into FS conformed space (assuming that that is what you want to do). doug
On 03/22/2013 04:43 PM, Joshua Lee wrote:
Hi All,
I wanted to get peoples advice on the best method of registration/interpolation to use on a manually traced segmentation (and its structural) that is not in the same space and orientation as the structurals I started Freesurfer with (although they both originally came from the same image. I want to maintain the integrity of the manual traced binary mask through this registration and reslice. For a number of reasons, I do not want to take Freesurfers output to the space of the manual segmentation.
What do people think is a good technique? Flirt nearest neighbor interpolation? Something different from Freesurfer? ANTs?
Josh
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.