Thank you. I want to view the thalamus as a volume in freesurfer. Do you know how to do that? also by exporting I mean exporting it as a volume and then import it into COMSOL as a geometry.
Thank you for your help!
Dorsa
On Wed, Jul 6, 2016 at 7:50 PM, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
what do you mean isolate? what do you mean export? You can create a binary mask in nifti format with mri_binarize --i aseg.mgz --match 10 49 --o thalamus.mask.nii.gz
On 07/06/2016 04:46 PM, Dorsa Haji Ghaffari wrote:
Hi,
I was able to segment the MRI successfully, now I am trying to isolate the thalamus and export it out of FS as a volume. Is there a way to do that in FS?
Thank you
Dorsa
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