Hi!
I'm new to freesurfer and I am trying to reconstruct some recent scans of a rhesus macaque. The dicoms appear to be fine, but after converting to cor files the images appear distorted. I have attached a screenshot as an example of what the images look like. For converting the dicoms to cor I used:
"mri_convert $path/1500-4-1.dcm $path/001 -ot COR -nc -sc 0.5"
I am using freesurfer 3 on ubuntu.
Any help you can give is much appreciated!