Thank you Allison, however, I checked the website and it is said that FreeSurfer transform the orig volume to the MNI305 atlas, so the spatial normalization in FreeSurfer is still done in volume space but not in surface space, right?
Best, Xiangyu
On Fri, Feb 24, 2012 at 5:20 AM, Allison Stevens Player < astevens@nmr.mgh.harvard.edu> wrote:
Maybe you can apply the transform using mri_convert or mri_vol2vol created during autorecon1. Is that what you are looking for?
http://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllDevTable
On Feb 22, 2012, at 11:26 AM, Long longspace82@gmail.com wrote:
Dear all,
I had EPI images and T1 image and the EPI images are already
co-registered to T1 image in their native space. I also run 'recon' on T1 image. I'd like to try surface-based spatial normalization in FreeSurfer, so how can I only do the spatial normalization of EPI images in FreeSurfer, i.e., transform EPI images from native space to mni152 space, then I could have surface-based normalized EPI images.
Best, Xiangyu _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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