Re: [Freesurfer] tkmedit doesn't show lines distinguishing grey and white matter

What gets printed out to the terminal? Can you load it through the interface?

On 07/31/2014 11:37 AM, Caspar M. Schwiedrzik wrote:

Hi Talia, this is a Problem with x11 forwarding. Everything works fine if you use VNC instead. Caspar

On Thursday, July 31, 2014, Talia Raney <talia.raney@gmail.com mailto:talia.raney@gmail.com> wrote:

Hi,
What seems to be happening is that I insert this command:
 tkmedit subject_id brainmask.mgz rh.white -aux T1.mgz
 -aux-surface lh.white -segmentation aseg.mgz
$FREESURFER_HOME/FreeSurferColorLUT.txt
it should show me the subcortical segmentation overlayed with the
pial, white, and orig surface lines shown. It no longer shows me
this after I made some control points in the coronal view.

Inline image 1
This is what should show
Inline image 2
Why is this?
Talia
On Mon, Jul 28, 2014 at 10:40 AM, Talia Raney
<talia.raney@gmail.com
<javascript:_e(%7B%7D,'cvml','talia.raney@gmail.com');>> wrote:

    Hi,
    I'm having issues with tkmedit. I'm doing visual inspection
    and I checked tkregister to be sure that the white matter is
    outlined in the functional image. However, when I open tkmedit
    for surface and cortical segmentation, it doesn't show up the
    red and green lines that distinguish the boundaries of the
    grey and white matter. It had previously and I put a few
    control points but now it doesn't show up at all.
    Why might this be and how can it be fixed?
    Thanks!
    Talia

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