30 Aug
2022
30 Aug
'22
7:01 a.m.
External Email - Use Caution
Hello dear all,
I want to use Freesurfer-Samseg for MS lesion segmentation(cross-sectional).
I got the T1 and Flair for this. I registered *flair to t1 *for every patient. My manual lesion masks are on DIR imaging. I am using FSL for registration. When I try to register my manual mask to new mask created by freesurfer samseg, fsl couldn't recognize the lesions.mgz extension.
Or should I use t1 space for registration? i tried that one. and then, my registration result was really bad.
As a consequence, ho should we deal with mask registration?
Best, Dilek