Thank you Bruce and Doug
but remember to delete the IsRunning file
Bruce Fischl wrote:
Hi Jake
looks like recon-all stopped in the middle of running. You can see this because (1) the recon-all.log file is in the middle of the surface deformation, with no error message or termination notice, and (2) there is an IsRunning.lh+rh in the scripts dir, meaning FreeSurfer thinks the recon is currently running. You can finish it with:
recon-all -s $subject -sd $SUBJECTS_DIR -make all
cheers, Bruce
On Tue, 10 Mar 2009 jake@nmr.mgh.harvard.edu wrote:
Hi All,
I was just wondering if anyone has had data missing from the surf directory in the recon folder of a subject, ie- right hemisphere data is missing, or no data at all. Here is the path to a recon where I recently have found missing data:
/space/amaebi/35/users/ablood/R01_Botox/R01BTX_recons/CD_R01BTX_pat2_sess4_recon_missing_surfdata
Any help would be greatly appreciated,
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