Run mris_preproc with a single subject and send the terminal output
On 8/7/19 11:47 AM, Reza Rahmanzadeh wrote:
External Email - Use CautionYes, i checked -projfrac 0.5 with old or new mris_preproc but didn’t work. I checked all registration, they are perfect.
On 7 Aug 2019, at 17:29, Greve, Douglas N.,Ph.D. DGREVE@mgh.harvard.edu wrote:
If you do not specify --projfrac-avg, does it come out as non-zero? If so, I would think that it is a problem with the registration. Have you checked the registrations?
On 8/7/19 11:25 AM, Reza Rahmanzadeh wrote: External Email - Use Caution
It means that for any given subjects i’ve had one -iv argument and then for mri_glmfit i used .fsgd file with the same order.
On 7 Aug 2019, at 17:23, Reza Rahmanzadeh reza.rahmanzadeh@unibas.ch wrote:
External Email - Use CautionYes, for mris_preproc:
mris_preproc --target fsaverage --hemi lh --projfrac-avg 0 1 0.25 --out lh.NDI_inflated.avg.mgh --iv <my ndi map_for controls and patients> <registration.lta for that subjects>
On 7 Aug 2019, at 17:14, Reza Rahmanzadeh reza.rahmanzadeh@unibas.ch wrote:
mris_preproc --target fsaverage --hemi lh --projfrac-avg 0 1 0.25 --out lh.NDI_inflated.avg.mgh
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.