Hi Sadia
by "plane" do you mean a snapshot of a slice? If so, you can set the slide in freeview with --slice <x y z> and write out an image and exit with -ss <filename>. If you want to do this in talairach coords you can add :transform=$SUBJECTS_DIR/$s/mri/transforms/talairach.xfm
to the name of the volume you are displaying
cheers Bruce
On Sun, 17 Feb 2019, Sadia Sheikh wrote:
External Email - Use Caution
Hello
My purpose is to get the specific(required) plane of axial view that lies in the midbrain region. For that i m thinking firstly to get all the planes of axial view from the midbrain region and then choose the best plane.i want to get the mickey mouse sign that lies in the axial direction from large number of data. So, i want to do this automatically.
Thanks Sadia
On Sat, Feb 16, 2019 at 12:17 AM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: Hi Sadia
can you elaborate what you are trying to do. What seleected plane? cheers Bruce On Fri, 15 Feb 2019, Sadia Sheikh wrote: > > External Email - Use Caution > > Dear FreeSurfer experts > > It is possible to automatically save the selected planes or set of planes from the specific region? > Since I have a large number of data and I want to save all the planes that lie in the midbrain region. > > Regards > Sadia > Research Student > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer