Please remember to post to the list ... Can you run it with --debug as the first option, then post all of the terminal output?
On 10/28/2020 11:21 PM, Elisabetta Ambron wrote:
External Email - Use Caution
Dear Prof Greve I am having an issue running reg-feat2anat and I get the following error
Initializing exf2anat with header tkregister2_cmdl_cmdl --targ /Applications/freesurfer/7.1.1/subjects/sub1/mri/brainmask.mgz --mov BLOCK1_LEFT.feat/example_func.nii.gz --reg BLOCK1_LEFT.feat/reg/freesurfer/anat2exf.register.dat.init --fslregout BLOCK1_LEFT.feat/reg/freesurfer/exf2anat.init.fsl.mat --regheader --noedit tkregister2_cmdl_cmdl: Command not found.
I saw your answer in https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg65643.html https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg65643.html I was not able to download the link because it requires an user and password. Could you help me with this issue Thank you Best Elisabetta Ambron