Hi Johannes,
I think you can run it with -diagonly and it will quit after identifying the defects (should just take a couple of minutes). I thought Florent had fixed this problem. What version are you running? We may need to wait for Flo to help with this....
Bruce
On Wed, 12 Jul 2006, Johannes Klein wrote:
Hi Nick, Thanks for your message. Unfortunately, the topology fixer did not produce a defect_labels file, it seems to have aborted before doing so. Is there a way to make mris_fix_topology produce the defect labels without actually running topology correction? I thought of trying the -correct_defect option with one of the defects that didn't cause problems. Does that make sense? Thanks, Johannes
Nick Schmansky schrieb:
Johannes,
To visualize defect locations:
tksurfer <subjid> lh inflated.nofix
then:
File->Curvature->Load Curvature
select:
surf/lh.defect_labels
and the defects will display in red.
Remember you can click on a defect vertex in tksurfer, then click 'save point' and then in tkmedit, click 'goto saved point', which is handy to see exactly where in a volume things went wrong.
Nick
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