Re: [Freesurfer] labels export

sorry, I don't know what obj format is either Bruce On Wed, 25 Apr 2012, Gabriel Gonzalez Escamilla wrote:

And what about exporting as obj format, I have found a function to transform surfaces to obj, is it possible something like this but with the labels? Regards, Gabriel

El 24/04/12, Bruce Fischl fischl@nmr.mgh.harvard.edu escribió: they are just ascii files so it should be easy enough to do yourself On Tue, 24 Apr 2012, Gabriel Gonzalez Escamilla wrote:

  >Thanks Priti,
  >
  >I've thought about that before, but actually I'm looking for literally .roi images, do you know if is this format
  possible from FS?
  >
  >Regards,
  >Gabriel
  >
  >
  >
  >El 24/04/12, Priti Srinivasan <rspriti@nmr.mgh.harvard.edu> escribió:
  >      Hi Gabriel,
  >
  >      Have you tried mri_label2vol?
  >
  >      If you want the volume in the anatomical space:
  >
  >      mri_label2vol --label labelname.label --temp <T1_template>.nii.gz
  >      --identity --o volumename.nii.gz
  >
  >      If you want it in some other space, you can specify the registration
  >      matrix using --reg and the template using --temp.
  >
  >      Hope that helps,
  >      Priti
  >
  >
  >
  >      > <div style="font-family: 'Times New Roman'; font-size: 16px; "><div>Hello
  >      > FreeSurfers,</div><div><br /></div><div>Does any one of you know if exist
  >      > a function to export labels as a ROI format?</div><div><br
  >      > /></div><div>Regards,</div><div>Gabriel</div></div><div><br />-- <br
  >      > /></div><div><font size="3">--------------------------<br />PhD. student
  >      > Gabriel González-Escamilla<br />Laboratory of Functional Neuroscience<br
  >      > />Department of Physiology, Anatomy, and Cell Biology<br />University
  >      > Pablo de Olavide<br />Ctra. de Utrera, Km.1<br />41013 - Seville<br />-
  >      > Spain -<br /><br />Email: ggonesc@upo.es<br
  >      > />http://www.upo.es/neuroaging/es/</font></div>
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  >--
  >--------------------------
  >PhD. student Gabriel González-Escamilla
  >Laboratory of Functional Neuroscience
  >Department of Physiology, Anatomy, and Cell Biology
  >University Pablo de Olavide
  >Ctra. de Utrera, Km.1
  >41013 - Seville
  >- Spain -
  >
  >Email: ggonesc@upo.es
  >http://www.upo.es/neuroaging/es/
  >
  >

--

PhD. student Gabriel González-Escamilla Laboratory of Functional Neuroscience Department of Physiology, Anatomy, and Cell Biology University Pablo de Olavide Ctra. de Utrera, Km.1 41013 - Seville

• Spain -

Email: ggonesc@upo.es http://www.upo.es/neuroaging/es/