Hi Freesurfer users,
I am new to Freesurfer and have run into difficulty with running the recon-all command in terminal on osx. When I type in the command bellow
recon-all –i IM-0001-0001.dcm –subject bert –all
I receive
ERROR: Flag i unrecognized.
Also the usage info on recon-all does not list -i as far as I can see. Has it been replaced by a different flag?
On a different note. Has anyone tried to install freesurfer on a second partition with the drive name containing a space character? I have two drives installed on my mac with the second drive foolishly labeled "Second Drive". When I tried to install the bash script (export and source commands) it ran into trouble recognising the space character between second and drive. I had to change the name to Second_Drive which unfortunately mucks up other apps that use the reference to that original name fine.
Any words of wisdom would be greatly appreciated.
Thanks in advance
Pascal