I got the following output after running the second stage of `rebuild_gca_atlas.csh', which starts by training on all segmented subjects. The first stage (which performs a Tal reg on the first subject listed in env var $SUBJECTS) finished without problems:
echo "$train using all subjects, using ${M3D_ONE}, producing ${GCA}..." set cmd=($train -prior_spacing 2 -node_spacing 4 -mask ${MASK_VOL}) set cmd=($cmd -parc_dir ${SEG_VOL} -xform ${M3D_ONE} -T1 ${T1_VOL} -check) set cmd=($cmd ${SUBJECTS} ${GCA})
--------- Execution stopped after this step: --------- (STDOUT) computing covariances for subject A59, 1 of 4... reading volume /Users/jsm/work/subjects/A59/mri/brain.mgz for masking... gunzip -c /Users/jsm/work/subjects/A59/mri/transforms/talairach_one.m3z GCAupdateNodeCovariance(10, 35, 23, 4): could not find label ---------
Here `$SUBJECTS' was set to 'A59 A62 f18 f20', with "A59" being the first subject.
Thanks in advance, Jason