Hi Allison, Thank you very much for your help! I am using v5.0.0. Is the surface of the white-matter (from the surface-based stream) used here to calculate the volume in CorticalWhiteMatterVol and is this why I have sub-millimeter values here? This value is in fact different from the value that can be calculated in mri_segstats for cerebral-white-matter using the command "mri_segstats --seg aseg.mgz --ctab $FREESURFER_HOME/FreeSurferColorLUT.txt --sum test1.stats". Is this because segstats makes the calculation here in voxels? Is it therefore better to take the value from CorticalWhiteMatterVol which would take the white-matter surface into account? Best, Ruthger
________________________________________ From: Allison Stevens [astevens@nmr.mgh.harvard.edu] Sent: Friday, May 20, 2011 2:56 PM To: Righart, Ruthger Dr. Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] What is the difference between Cerebral-white-matter and Cortical-white-matter in Freesurfer?
Which version of FreeSurfer are you using? In the more recent versions, they are the same. Cortical White Matter is all the white matter contained within the white surface minus the subcortical gray matter and ventricles, etc.
On May 20, 2011, at 7:37 AM, "Righart, Ruthger Dr." Ruthger.Righart@med.uni-muenchen.de wrote:
Dear All,
I am working with the volume-based stream in Freesurfer and I have a question about what is the difference between the volumes given for Cortical-white-matter and Cerebral-white-matter? How are the volumes calculated for both in Freesurfer? Is it the difference of including or not including the subcortical gray matter and ventricles in the calculation?
I have read previous mailings ( e.g. http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg15449.html ) but I am still confused what is the difference between these measures.
Thank you very much in advance for your help!
Ruthger Righart (PhD)
Institute for Stroke and Dementia Research (ISD) Klinikum der Universität München Max-Lebsche-Platz 30 81377 Munich | Germany
Ruthger.Righart@med.uni-muenchen.de
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.