Hi,
On the off chance that you are comfortable with Python, you may find that PySurfer http://pysurfer.github.com/ provides a more pleasant scripting environment than the tcl-based TkSurfer interface :)
Best, Michael
On Tue, Feb 7, 2012 at 12:46 PM, Douglas N Greve greve@nmr.mgh.harvard.eduwrote:
Hi Knut, you can check out my script called tksnap (uses accopanying mytks.tcl). It will take pics in different orientations. Note: this is not a supported script, so it's up to you to figure out what it does and how it does it. I provide it as a way to help you figure this stuff out. If you don't know csh and tcl, then it's not going to be much use to you. Good luck! doug
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/tksnap ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mytks.tcl
Knut J Bjuland wrote:
Hi Bruce
Is it possible to use ascript to create a similar figure to the jpg file I am attaching?
Knut J
On 07. feb. 2012 15:09, Bruce Fischl wrote:
Hi Knut
you can use a tcl script in tksurfer if you want. You are probably better off doing the 10^-log(p) on your own and saving it as a separate overlay. There are plenty of tcl scripts in the distribution as examples. A simple one would be:
set val $home/$subject/label/$hemi.your_overlay.mgz puts "loading overlay $val" sclv_read_binary_values sclv_current_field redraw save_tiff $odir/$hemi.your_overlay.lateral.tif rotate_brain_y 180 redraw save_tiff $odir/$hemi.your_overlay.medial.tif
put that in a file named something.tcl then load tksurfer with -tcl something.tcl
I don't know about the 500dpi though, sorry.
cheers Bruce
On Tue, 7 Feb 2012, Knut J Bjuland wrote:
I have used Tksurfer to make image from cross subject statistics maps in mgh files. Is it possible to use a script to make image with both hemisphere in lateral and medial view. I would also like to display p values as 10^-log(p). Is this possible? Can I use Matlat or FDR? How can I produce image with 500 dpi in tksurfer?
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