Juergen,
I see that your Matterhorn Cluster uses AMD Opteron dual processors. This is fine (we use the same processor in our cluster, along with Athlons and newer Xeons).
However, I do not see which OS is used in your cluster. Freesurfer supports most of the Linux OS's, and so I do not foresee any insurmountable problems for running Freesurfer on your cluster.
Per another mailing list thread, Freesurfer does not currently run in a fine-grained parallel manner (that is, it is not multi-threaded). But clusters are regularly used to process one subject per node, thus a group of subjects can be processed 'in parallel'.
Nick
On Fri, 2006-12-08 at 09:10 +0100, Juergen Haenggi wrote:
Dear Freesurfer user
because Freesurfer is so processor and memory intensive, we intented to run Freesurfer parallely on a supercomputer (called Matterhorn Cluster http://www.id.unizh.ch/dl/wissrechnen/HPC-Supercomputing-Main.html).
Does Freesurfer is able to run on such a machine without modifying it? What are potential problems that could occur?
Thanks in advance Best regards Juergen
Juergen Haenggi, Ph.D. student Neuropsychology and Imaging Division of Psychiatry Research Psychiatric University Hospital University of Zurich, Switzerland P.O. Box 1931 Lenggstrasse 31, 8032 Zurich 0041 44 384 26 10 (office phone) 0041 76 445 86 84 (mobile phone) 0041 44 384 26 86 (fax) H 115 (office room number) juergen.haenggi@bli.unizh.ch (division email) http://www.dpr.unizh.ch/ (division website) http://www.juergenhaenggi.ch (private website)
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