[Freesurfer] Skullstriping problems

MATEUS ROZALEM ARANHA

11 Aug 2017 11 Aug '17

9:56 a.m.

Hi,

I had problems with skullstriping. I ran recon-all and part of the skull is being considered as cortex in the segmentation. I tried to fix this using:

*recon-all -skullstrip -wsthresh 50 -clean-bm -subjid <subject name>*

and than

*recon-all -autorecon-pial -subjid <subject name>*

But nothing changed.

Do I need to run recon-all all over?

Thanks, Mateus

Attachments:

attachment.html (text/html — 602 bytes)

Back to the thread

Back to the list