The images are: 0.5 x 0.5 x 1.0
Can mri_convert fix it or should I edit the Nifti header?
2011/5/16 Nick Schmansky nicks@nmr.mgh.harvard.edu
PPJ,
Hi,
mri_info /space/incoming/ga_2010.nii
shows that the image is 0.5 x 0.5 x 0.5. but when viewing in freeview or tkmedit, the brain seems 'squashed', as if there is a slice gap. do you know the details of how this was acquired?
N.
On Mon, 2011-05-16 at 17:49 -0300, Pedro Paulo de Magalhães Oliveira Junior wrote:
I'm having this error in the recon-all
#-------------------------------------------- #@# Talairach Mon May 16 16:38:01 EDT 2011 /usr/local/freesurfer/subjects/GAGRICOLA/mri
talairach_avi --i orig.mgz --xfm transforms/talairach.auto.xfm
ERROR: mpr2mni305 failed, see transforms/talairach_avi.log
I've uploaded to the ftp at surfer.nmr.mgh.harvard.edu the talairach_avi.log, the orig.mgz (as ppj_orig.mgz) and the original nifti image as ga_2010.nii
Any hints?
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