Hi Tina, sorry no one got to your first email. Sometimes emails do fall through the cracks, so always feel free to repost. It is not clear to me what command you are running or what you are trying to do. Can you supply more detail? doug
On 04/02/2012 11:55 AM, Tina Jeon wrote:
Hi Doug could you please answer these questions that I posted on the listserv. Your help would be much appreciated to an upcoming project on cortical development. Thank you.
I noticed that the newest version of freesurfer does not output a
?h.base.mgh file, which contains vertices, but no triangular meshes and corresponding gyral labels from the color look up table.
Question:
1). Why does my cortical labels created using tksurfer correspond to the vertices in the base.mgh file and not the pial surface that I drew the surface on?
2). Is there a file in place of the ?h.base.mgh file in the newer version of freesurfer? i.e. called a different name?
My goal is to figure out which surface aligns with my manually created cortical labels for visualization.
I am running version FSv5.0.0 on Centos4_x86_64 bit.
Many thanks,
Tina Jeon
UT Southwestern Medical Center The future of medicine, today.