Hi Rujing
1. No, you can always combine the hemispheres into a volume later (e.g. by adding them).
2. Try --identity <subject name>
cheers Bruce
On Sat, 15 Mar 2014, charujing123 wrote:
Hi doug and other FS experts, Thanks doug. I have 2 new questions: 1,What you told me is generate a hemisphere. So there is only one hemisphere I can see in the AFNI? 2,After typing this code: "mri_surf2vol --surfval rh.36sb.10.mgh --hemi rh --fillribbon --subject fsaverage --template/mnt/sdb1/psylab16/BACKUP/freesurfer/freesurfer/subjects/fsaverage/mri/orig --o test.nii." the command window echo this error message: "gdiagno = -1 A volume registration file must be supplied" Thanks. All the best. Rujing Zha 2014-03-13
charujing123
发件人：Douglas Greve greve@nmr.mgh.harvard.edu 发送时间：2014-03-12 23:00 主题：Re: [Freesurfer] convert sig.mgh into *.nii 收件人："freesurfer"freesurfer@nmr.mgh.harvard.edu 抄送：
Use mri_surf2vol to do this. Soemthing like
mri_surf2vol --surfval rh.36...mgh --hemi rh --fillribbon --subject fsaverage --template $SUBJECTS_DIR/fsaverage/mri/orig --o yourvolume.nii
doug
On 3/11/14 10:10 PM, charujing123 wrote: Hi Bruce, Thanks Bruce. I knew that code, but I have no idea to deal with my problem after reading the help. Would you please tell me how to use mri_surf2vol after I describe my problem details? I have a file named rh.36sb.score.thickness.10.mgh which is created from the "mris_preproc --fsgd $FSGDFILE --target fsaverage --hemi $style --meas thickness --out ${style}.${FSGDFILE%_*}.00.mgh". I want to convert this file into nii format volume-based, so I can read it by AFNI. Thanks. All the best. Rujing Zha 2014-03-12
charujing123
发件人：Bruce Fischl fischl@nmr.mgh.harvard.edu 发送时间：2014-03-12 09:44 主题：Re: [Freesurfer] convert sig.mgh into *.nii 收件人："charujing123"charujing123@163.com 抄送："freesurfer@nmr.mgh.harvard.edu"freesurfer@nmr.mgh.harvard.edu try mri_surf2vol with the output volume named .nii cheers Bruce On Wed, 12 Mar 2014, charujing123 wrote:
Hi doug, Thanks doug. I try this code, but it represent two dimension for each subject data whe
n
loaded in the AFNI. Is there any code to volume-based conversion from mgh
to
nii? All the best. Rujing Zha 2014-03-12 _________________________________________________________________________
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charujing123 _________________________________________________________________________
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发件 人：Douglas N Greve greve@nmr.mgh.harvard.edu 发送时间：2014-03-12 00:16 主题：Re: [Freesurfer] convert sig.mgh into *.nii 收件 人："freesurfer"freesurfer@nmr.mgh.harvard.edu 抄送： mri_convert file.mgh file.nii doug On 03/11/2014 05:55 AM, charujing123 wrote: > Hi FS experts, > I want to extract time course from sig.mgh. But the *.y.ocn.mgh cannot
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> be created. So I want to view it in other formats, such as nii. So how
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> to convert it into nii format. > Thanks. > All the best. > Rujing Zha > 2014-03-11 > -----------------------------------------------------------------------
- ?? ?> charujing123
> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer%C2%A0%C2%A0 -- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2%C2%A0%C2%A0 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
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