i tried replacing this file in tktools with the new tkregister2.bin, and i get a new error: /lib64/tls/libc.so.6: version GLIBC_2.4 not found
On Mon, Nov 5, 2012 at 6:06 PM, Douglas Greve greve@nmr.mgh.harvard.eduwrote:
OK, I see the problem. I should have told you to put tkregsiter2.bin into /apps/fs510/tktools/ (after making a copy of the one there). doug
On 11/5/12 5:00 PM, Eric Cunningham wrote:
[e4fs@cluster bin]$ ls -l `which tkregister2.bin` -rwxr-xr-- 1 jsadinol fs 21663433 May 22 2011 /apps/fs510/tktools/ tkregister2.bin
[e4fs@cluster bin]$ tkregister2 --all-info ProgramName: tkregister2.in ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2012/11/05-21:43:36-GMT BuildtimeStamp: May 22 2011 08:23:31 CVS: $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $User: e4fs Machine: cluster.mrilab.net Playform: Linux PlatformVersion: 2.6.9-55.0.2.ELsmp CompilerName: GCC CompilerVersion: 30400
fyi: /apps/fs510/ = $FREESURFER_HOME i tried replacing this file in tktools with the new tkregister2.bin, and i get a new error: /lib64/tls/libc.so.6: version GLIBC_2.4 not found
On Mon, Nov 5, 2012 at 11:34 AM, Douglas N Greve < greve@nmr.mgh.harvard.edu> wrote:
Can you send me the result of
ls -l `which tkregister2.bin`
and
tkregister2 --all-info
doug
On 11/05/2012 03:54 PM, Eric Cunningham wrote:
retried it, same error
new file is .bin, old file is tkregister2, no old tkregister2.bin file appeared to be in the folder $FREESURFER_HOME/bin
On Mon, Nov 5, 2012 at 10:49 AM, Douglas N Greve < greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:
I'm not sure that was the right thing to do. There should be two files: tkregister2 and tkregister2.bin. tkregister2 is just a script that calls tkregister2.bin after setting up some environment variables. Try keeping the original file name. doug On 11/05/2012 03:43 PM, Eric Cunningham wrote: > i am sure > there is one irregularity, namely that the '.bin' extension is absent > from our old file, so i renamed the new file without it (as > tkregister2) and moved the other one to tkregister2_backup > > the command i listed from previous threads was given to someoneelse > from our lab (and probably worked), so it is likely that the problem > is somewhere on our side, i was just hoping that it was known and > recognizable from the error > > > > On Mon, Nov 5, 2012 at 10:15 AM, Douglas N Greve > <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu>> wrote: > > are you sure you are using the new version? > > > On 11/05/2012 02:38 PM, Eric Cunningham wrote: > > tried the new version, and it errored out at the same step > > ERROR: Option --lta-inv unknown > > thanks again for your help! > > On Mon, Nov 5, 2012 at 8:16 AM, Douglas N Greve > <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> > <mailto:greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu>>> wrote: > > Try using this version >
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/tkregister2.bin > copy it into $FREESURFER_HOME/bin (but make a back up of > the existing > tkregister2.bin first!) > doug > > On 11/02/2012 03:58 PM, Eric Cunningham wrote: > > Hi folks, > > In previous threads, the command provided to check the > talairach.lta is... > > tkregister2 --mov $FREESURFER_HOME/average/RB_all_2008-03-26.gca > \ --targ ../brainmask.mgz --lta-inv talairach.lta --reg > talairach.lta.reg.dat \ --surfs --s $subject > > > > When I try to run this command, I run into trouble with the > --lta-inv > > portion. (it is an unknown option). I am running version 5.1. > > Can anyone help? > > Thanks, > > -Eric > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu>> > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu
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